CCGG

The CCGG probe database can be downloaded here.
The CCGG supplementary material can be downloaded here. It includes the core genome size estimation in Collaborative Cross (CC) and details about graphical genome construction, including anchor selection, edge creation, adding CC path, graph annotation, graph manipulation and graphical genome compression.
With CC and gene annotations, genomic regions within recombination are identified in CC strains. Information of CC recombination within gene bodies is provided in supplementary table 5. ( The overall gene recombination information is provided in Sheet 1. Information of a CC path that incorporates multiple recombination within a single gene is provided in sheet 2. A list of genes that contain multiple CC recombination is provided in sheet 3.) CC recombination information that occur within exons is also provided in supplementary table 6.